Robin Dowell's Publications
This folder holds the following references to publications, sorted by year and author.
There are 7 references in this bibliography folder.
Gerber, GK, Dowell, RD, Jaakkola, TS, and Gifford, DK
(2007).
Automated discovery of functional generality of human gene expression programs.
PLoS Comput Biol, 3(8):e148.
Odom, DT, Dowell, RD, Jacobsen, ES, Gordon, W, Danford, TW, MacIsaac, KD, Rolfe, PA, Conboy, CM, Gifford, DK, and Fraenkel, E
(2007).
Tissue-specific transcriptional regulation has diverged significantly between human and mouse.
Nat Genet, 39(6):730-2.
Dowell, RD and Eddy, SR
(2006).
Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints.
BMC Bioinformatics, 7:400.
Odom, DT, Dowell, RD, Jacobsen, ES, Nekludova, L, Rolfe, PA, Danford, TW, Gifford, DK, Fraenkel, E, Bell, GI, and Young, RA
(2006).
Core transcriptional regulatory circuitry in human hepatocytes.
Mol Syst Biol, 2:2006.0017.
Qi, Y, Rolfe, A, MacIsaac, KD, Gerber, GK, Pokholok, D, Zeitlinger, J, Danford, T, Dowell, RD, Fraenkel, E, Jaakkola, TS, Young, RA, and Gifford, DK
(2006).
High-resolution computational models of genome binding events.
Nat Biotechnol, 24(8):963-70.
Dowell, RD and Eddy, SR
(2004).
Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction.
BMC Bioinformatics, 5:71.
Dowell, RD, Jokerst, RM, Day, A, Eddy, SR, and Stein, L
(2001).
The distributed annotation system.
BMC Bioinformatics, 2:7.
